Cardiovascular Biomarker Discovery by SELDI-TOF Mass Spectrometry
| Abstract |
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Surface-enhanced laser desorption/ionization time-of-flight mass spectrometry (TOF-MS) allows for rapid differential proteomic
analysis of various experimental conditions. In the first step of retention chromatography, the proteome to be analyzed is
fractionated based on the biochemical properties of the proteins or peptides of which it is composed. TOF-MS separates the
proteins according to their molecular mass and charge (m/z in which conditions are optimized to obtain single charged proteins: z = 1). The most discriminating conditions are used
to validate differential peaks on a larger number of samples. Once the biomarker is statistically validated, its identification
is performed by reproducing the chromatographic conditions that are appropriate for its retention on spin-columns, followed
by sodium dodecyl sulfate-polyacrylamide gel electrophoresis, trypsin digestion of the band of interest, and subsequent peptide
mapping after MS. It may be necessary to determine part of the amino acid sequence of the protein of interest to confirm its
identity.
Affiliation(s): (3) Cardiovascular Haemostasis, Bioengineering, and Remodeling, CHU X, Bichat, INSERM U698, Paris, France
Book Title: Cardiovascular Proteomics: Methods and Protocols
Series: Methods in Molecular Biology | Volume: 357 | Pub. Date: Feb-05-2007 | Page Range: 331-341 | DOI: 10.1385/1-59745-214-9:331
Subject: Molecular Medicine
Key Words: SELDI-TOF - mass spectrometry - biomarker - cardiovascular - protein chip - chromatography - hypertension - rat - plasma - secretome
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