| 1. |
Marshall, E. (1999) Do-it-yourself gene watching. Science
286, 444–447.
|
| |
| 2. |
Bustin, S. A. (2002) Quantification of mRNA using real-time reverse transcription PCR (RT-PCR): trends and problems. J. Mol. Endocrinol.
29, 23–39.
|
| |
| 3. |
Gilliland, G., Perrin, S., Blanchard, K., and Bunn, H. F. (1990) Analysis of cytokine mRNA and DNA: Detection and quantitation
by competitive polymerase chain reaction. Proc. Natl. Acad. Sci. USA
87, 2725–2729.
|
| |
| 4. |
Apostolakos, M. J., Schuermann, W. H., Frampton, M. W., Utell, M. J., and Willey, J. C. (1993) Measurement of gene expression
by multiplex competitive polymerase chain reaction. Anal. Biochem.
213, 277–284.
|
| |
| 5. |
Willey, J. C., Crawford, E. L., and Jackson, C. M. (1998) Expression measurement of many genes simultaneously by quantitative
RT-PCR using standardized mixtures of competitive templates. Am. J. Respir. Cell Mol. Biol.
19, 6–17.
|
| |
| 6. |
Crawford, E. L., Peters, G. J., Noordhuis, P., et al. (2001) Reproducible gene expression measurement among multiple laboratories
obtained in a blinded study using standardized RT (StaRT)-PCR. Mol. Diagn.
6, 217–225.
|
| |
| 7. |
Crawford, E. L., Warner, K. A., Khuder, S. A., et al. (2002) Multiplex standardized RT-PCR for expression analysis of many
genes in small samples. Biochem. Biophys. Res. Commun.
293, 509–516.
|
| |
| 8. |
Crawford, E. L., Khuder, S. A., Durham, S. J., et al. (2000) Normal bronchial epithelial cell expression of glutathione transferase
P1, glutathione transferase M3, and glutathione peroxidase is low in subjects with bronchogenic carcinoma. Cancer Res.
60, 1609–1618.
|
| |
| 9. |
DeMuth, J. P., Jackson, C. M., Weaver, D. A., et al. (1998) The gene expression index c-myc x E2F1/p21 is highly predictive of malignant phenotype in human bronchial epithelial cells. Am. J. Respir. Cell. Mol. Biol.
19, 18–24.
|
| |
| 10. |
Mollerup, S., Ryberg, D., Hewer, A., Phillips, D. H., and Haugen, A. (1999) Sex differences in lung CYP1A1 expression and
DNA adduct levels among lung cancer patients. Cancer Res.
59, 3317–3320.
|
| |
| 11. |
Rots, M. G., Willey, J. C., Jansen, G., et al. (2000) mRNA expression levels of methotrexate resistance-related proteins in
childhood leukemia as determined by a standardized competitive template-based RT-PCR method. Leukemia
14, 2166–2175.
|
| |
| 12. |
Rots, M. G., Pieters, R., Peters, G. J., et al. (1999) Circumvention of methotrexate resistance in childhood leukemia subtypes
by rationally designed antifolates. Blood
94, 3121–3128.
|
| |
| 13. |
Allen, J. T., Knight, R. A., Bloor, C. A., and Spiteri, M. A. (1999) Enhanced insulin-like growth factor binding protein-related
protein 2 (connective tissue growth factor) expression in patients with idiopathic pulmonary fibrosis and pulmonary sarcoidosis.
Am. J. Respir. Cell. Mol. Biol.
21, 693–700.
|
| |
| 14. |
Loitsch, S. M., Kippenberger, S., Dauletbaev, N., Wagner, T. O., and Bargon, J. (1999) Reverse transcription-competitive multiplex
PCR improves quantification of mRNA in clinical samples-application to the low abundance CFTR mRNA. Clin. Chem.
45, 619–624.
|
| |
| 15. |
Vondracek, M. T., Weaver, D. A., Sarang, Z., et al. (2002) Transcript profiling of enzymes involved in detoxification of xenobiotics
and reactive oxygen in human normal and Simian virus 40 T antigen-immortalized oral keratinocytes. In. J. Cancer
99, 776–782.
|
| |
| 16. |
Ding, C. and Cantor, C. R. (2003) A high-throughput gene expression analysis technique using competetive PCR and matrix-assisted
laser desorption ionization time-of-flight MS. Proc. Natl. Acad. Sci. USA
100, 3059–3064.
|
| |
| 17. |
Zhang, J., Day, I. N. M., and Byrne, C. D. (2002) A novel medium-throughput quantitative competitive PCR technology to simultaneously
measure mRNA levels from multiple genes. Nucleic Acids Res.
30, e20.
|
| |
| 18. |
Becker-Andre, M. and Hahlbrock, K. (1989) Absolute messenger-RNA quantification using the polymerase chain-reaction (PCR)
− a novel-approach by a PCR aided transcript titration assay (patty) nucleic acids research. Nucleic Acids Res.
17, 9437–9446.
|
| |
| 19. |
Wang, A. M., Doyle, M. V., and Mark, D. F. (1989) Quantitation of mRNA by the polymerase chain reaction. Proc. Natl. Acad. Sci. USA
86, 9717–9972.
|
| |
| 20. |
Zhang, J. and Byrne, C.D. (1997) A novel highly reproducible quantitative competitive RT-PCR system. J. Mol. Biol.
274, 338–352.
|
| |
| 21. |
Zhou, N. M., Matthys, P., Polacek, C., et al. (1997) A competitive RT-PCR method for the quantitative analysis of cytokine
mRNAs in mouse tissues. Cytokine
9, 212–218.
|
| |
| 22. |
Lyon, E., Millson, A., Lowery, M. C., et al. (2001) Quantification of HER2/neu gene amplification by competitive PCR using
fluorescent melting curve analysis. Clin. Chem.
47, 844–851.
|
| |
| 23. |
Hirano, T., Haque, M., and Utiyama, H. (2002) Theoretical and experimental dissection of competitive PCR for accurate quantification
of DNA. Anal. Biochem.
303, 57–65.
|
| |
| 24. |
Blaschke, V., Reich, K., Blaschke, S., Zipprich, S., and Neumann, C. (2002) Quantitative RT-PCR: comparing real-time LightCycler
technology with quantitative competitive RT-PCR, Biochemica
1, 6–7, http://www.Roche-Applied-Science.com, http://www.roche-applied-science.com/biochemica/no1_02/PDF/p6.pdf
|
| |
| 25. |
Livak, K. J. and Schmittgen, T. D. (2001) Analysis of related gene expression data using real-time quantitative RT-PCR and
the 2 (-Delta Delta C(T)) method. Methods
25, 402–408.
|
| |
| 26. |
Meijerink, J., Mandigers, C., van de Locht, L., et al. (2001) A novel method to compensate for different amplification efficiencies
between patient DNA samples in quantitative real-time PCR. J. Mol. Diagn.
3, 55–61.
|
| |
| 27. |
Akane, A., Matsuara, K., Nakamura, H., Takahashi, S., and Kimura, K. (1994) Identification of the heme compound co-purified
with deoxyribonucleic acid (DNA) from blood stains, a major inhibitor of polymerase chain reaction (PCR) amplification. J. Forensic Sci.
39, 362–372.
|
| |
| 28. |
Zhu, Y. H., Lee, H. C., and Zhang, L. (2002) An examination of heme action in gene expression: Heme and heme deficiency affect
the expression of diverse genes in erythroid K562 and neuronal PC12 cells. DNA Cell Biol.
21, 333–346.
|
| |
| 29. |
Giulietti, A., Overbergh, L., Valckx, D., et al. (2001) An overview of real-time quantitative PCR: applications to quantify
cytokine gene expression. Methods
25, 386–401.
|
| |
| 30. |
Heid, C. A., Stevens, J., Livak, K. J., and Williams, P. M. (1996) A novel method for real time quantitative RT-PCR. Genome Res.
6, 986–994.
|
| |
| 31. |
Winer, J., Jung, C. K. S., Shackel, I., and Williams, P. M. Development and validation of real-time quantitative reverse transcriptase-polymerase
chain reaction for monitoring gene expression in cardiac myocytes in vitro. Anal. Biochem.
270, 41–49.
|
| |
| 32. |
Bustin, S. A. (2000) Absolute quantification of mRNA using real-time reverse transcription polymerase chain reaction assays.
J. Mol. Endorinol.
25, 169–193.
|
| |
| 33. |
Crawford, E. L., Warner, K. A., Weaver, D. A., and Willey, J. C. (2001) Quantitative end-point RT-PCR gene expression measurement
using the Agilent 2100 Bioanalyzer and standardized RT-PCR. http://www.chem.agilent.com/temp/rad6A17F/00029012.pdf.
|
| |
| 34. |
Chomczynski, P. and Sacchi, N. (1993) Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform
extraction. Anal. Biochem.
62, 156–159
|
| |
| 35. |
Willey, J. C., Coy, E. L., Frampton, M. W., et al. (1997) Quantitative RT-PCR measurement of cytochromes p450 1A1, 1B1, and
2B7, microsomal epoxide hydrolase, and NADPH oxidoreductase expression in lung cells of smokers and non-smokers. Am. J. Respir. Cell Mol. Biol.
17, 114–124.
|
| |
| 36. |
Celi, F. S., Zenilman, M. E., and Shuldiner, A. R. (1993) A rapid and versatile method to synthesize internal standards for
competitive PCR. Nucleic Acids Res.
21, 1047.
|
| |