Quantifying Protein in 2-D PAGE Solubilization Buffers
| Abstract |
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Accurate quantitative and qualitative comparison of resolved proteins by two-dimensional polyacrylamide gel electrophoresis
(2-D PAGE) requires that identical amounts of sample be loaded on each gel. Use of trichloroacetic acid (TCA) or organic solvent
precipitation protocols followed by a protein assay results in either over- or underestimation of solubilized protein concentration.
Furthermore, the practice of loading equivalent amounts of radioactively labeled protein-based counts/min or loading extract
from the same number of cells is inaccurate. The author has observed that radioactively labeled cell extracts exhibit 10–20%
variances in protein concentration. Similarly, solubilization of 2Ã106 cells from a number of colorectal carcinoma cell lines resulted in protein concentrations ranging from 1.60 to 3.93 μg protein/μL
buffer (1). Therefore, the ability to quantify protein actually solubilized in 2-D PAGE sample buffers is necessary to allow users
to adjust for variable solubility properties of protein(s).
Book Title: 2-D Proteome Analysis Protocols
Series: Methods in Molecular Biology | Volume: 112 | Pub. Date: Sep-24-1998 | Page Range: 99-103 | DOI: 10.1385/1-59259-584-7:99
Subject: Biochemistry
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