| 1. |
Lederberg, J. (1952) Cell genetics and hereditary symbiosis. Physiol. Rev.
32, 403–430.
|
| |
| 2. |
Summers, D. K. (1996) The Biology of Plasmids, Blackwell Science, Oxford.
|
| |
| 3. |
Thomas, C. M. (ed.) (2000) The Horizontal Gene Pool. Harwood Academic, Amsterdam.
|
| |
| 4. |
Cohen, S. N. (1993) Bacterial plasmids: their extraordinary contribution to molecular genetics. Gene
135, 67–76.
|
| |
| 5. |
Lederberg, J. (1998) Plasmid (1952–1997). Plasmid
39, 1–9.
|
| |
| 6. |
Casjens, S., Palmer, N., van Vugt, R., et al. (2000) A bacterial genome in flux: the twelve linear and nine circular extrachromosomal
DNAs in an infectious isolate of the Lyme disease spirochete Borrelia burgdorferi. Mol. Microbiol.
35, 490–516.
|
| |
| 7. |
Muller, R. E., Ano, T., Imanaka, T., et al. (1986) Complete nucleotide sequences of Bacillus plasmids pUB110dB, pRBH1 and its copy mutants. Mol. Gen. Genet.
202, 169–171.
|
| |
| 8. |
Barnett, M. J., Fisher, R. F., Jones, T., et al. (2001) Nucleotide sequence and predicted functions of the entire Sinorhizobium meliloti pSymA megaplasmid. Proc. Natl. Acad. Sci. USA
98, 9883–9888.
|
| |
| 9. |
Chan, P. T., Ohmori, H., Tomizawa, J., et al. (1985) Nucleotide sequence and gene organization of ColE1 DNA. J. Biol. Chem.
260, 8925–8935.
|
| |
| 10. |
She, Q., Phan, H., Garrett, R. A., et al. (1998) Genetic profile of pNOB8 from Sulfolobus: the first conjugative plasmid from an archaeon. Extremophiles
2, 417–425.
|
| |
| 11. |
Frost, L. S., Ippen-Ihler, K., and Skurray, R.A. (1994) Analysis of the sequence and gene products of the transfer region
of the F sex factor. Microbiol. Rev.
58, 162–210.
|
| |
| 12. |
Yamasaki, M., Miyashita, K., Cullum, J., et al. (2000) A complex insertion sequence cluster at a point of interaction between
the linear plasmid SCP1 and the linear chromosome of Streptomyces coelicolor A3(2). J. Bacteriol.
182, 3104–3110.
|
| |
| 13. |
Kunnimalaiyaan, M., Stevenson, D. M., Zhou, Y., et al. (2001) Analysis of the replicon region and identification of an rRNA
operon on pBM400 of Bacillus megaterium QM B1551. Mol. Microbiol.
39, 1010–1102.
|
| |
| 14. |
del Solar, G. and Espinosa, M. (2000) Plasmid copy number control: an ever-growing story. Mol. Microbiol.
37, 492–500.
|
| |
| 15. |
Kobryn, K. and Chaconas, G. (2001) The circle is broken: telomere resolution in linear replicons. Curr. Opin. Microbiol.
4, 558–564.
|
| |
| 16. |
Meinhardt, F., Schaffrath, R., and Larsen, M. (1997) Microbial linear plasmids. Appl. Microbiol. Biotechnol.
47, 329–336.
|
| |
| 17. |
Volff, J. N. and Altenbuchner, J. (2000) A new beginning with new ends: linearisation of circular chromosomes during bacterial
evolution. FEMS Microbiol. Lett.
186, 143–150.
|
| |
| 18. |
Champoux, J. J. (2001) DNA topoisomerases: structure, function, and mechanism. Annu. Rev. Biochem.
70, 369–413.
|
| |
| 19. |
Khan, S. A. and Novick, R. P. (1983) Complete nucleotide sequence of pT181, a tetracycline-resistance plasmid from Staphylococcus aureus. Plasmid
10, 251–259.
|
| |
| 20. |
Peng, X., Holz, I., Zillig, W., et al. (2000) Evolution of the family of pRN plasmids and their integrase-mediated insertion
into the chromosome of the crenarchaeon Sulfolobus solfataricus. J. Mol. Biol.
303, 449–454.
|
| |
| 21. |
Futcher, A. B. (1988) The 2μ circle plasmid of Saccharomyces cerevisiae. Yeast
4, 27–40.
|
| |
| 22. |
Betlach, M., Hershfield, V., Chow, L., et al. (1976). A restriction endonuclease analysis of the bacterial plasmid controlling
the EcoRI restriction and modification of DNA. Fed. Proc.
35, 2037–2043.
|
| |
| 23. |
Schickel, J., Helmig, C., and Meinhardt, F. (1996) Kluyveromyces lactis killer system: analysis of cytoplasmic promoters of the linear plasmids. Nucleic Acids Res.
24, 1879–1886.
|
| |
| 24. |
Dunny, G. M. and Clewell, D. B. (1975) Transmissible toxin (hemolysin) plasmid in Streptococcus faecalis and its mobilization of a noninfectious drug resistance plasmid. J. Bacteriol.
124, 784–790.
|
| |
| 25. |
Berg, T., Firth, N., Apisiridej, S., et al. (1998) Complete nucleotide sequence of pSK41: evolution of staphylococcal conjugative
multiresistance plasmids. J. Bacteriol.
180, 4350–4359.
|
| |
| 26. |
Silver, S. and Phung, L. T. (1996) Bacterial heavy metal resistance: new surprises. Annu. Rev. Microbiol.
50, 753–789.
|
| |
| 27. |
McClelland, M., Sanderson, K. E., Spieth, J., et al. (2001) Complete genome sequence of Salmonella enterica serovar typhimurium LT2. Nature
413, 852–856.
|
| |
| 28. |
Lindler, L. E., Plano, G. V., Burland, V., et al. (1998) Complete DNA sequence and detailed analysis of the Yersinia pestis KIM5 plasmid encoding murine toxin and capsular antigen. Infect. Immun.
66, 5731–5742.
|
| |
| 29. |
Martinez, B., Tomkins, J., Wackett, L. P., et al. (2001) Complete nucleotide sequence and organization of the atrazine catabolic
plasmid pADP-1 from Pseudomonas sp. strain ADP. J. Bacteriol.
183, 5684–5697.
|
| |
| 30. |
Bertoni, G., Perez-Martin, J., and de Lorenzo, V. (1997) Genetic evidence of separate repressor and activator activities of
the XylR regulator of the TOL plasmid, pWW0, of Pseudomonas putida. Mol. Microbiol.
23, 1221–1227.
|
| |
| 31. |
Ben-Dov, E., Nissan, G., Pelleg, N., et al. (1999) Refined, circular restriction map of the Bacillus thuringiensis subsp. israelensis plasmid carrying the mosquito larvicidal genes. Plasmid
42, 186–191.
|
| |
| 32. |
Okinaka, R. T., Cloud, K., Hampton, O., et al. (1999) Sequence and organization of pXO1, the large Bacillus anthracis plasmid harboring the anthrax toxin genes. J. Bacteriol.
181, 6509–6515.
|
| |
| 33. |
Nolling, J., Breton, G., Omelchenko, M. V., et al. (2001) Genome sequence and comparative analysis of the solvent-producing
bacterium Clostridium acetobutylicum. J. Bacteriol.
183, 4823–4838.
|
| |
| 34. |
Finan, T. M., Weidner, S., Wong, K., et al. (2001) The complete sequence of the 1,683-kb pSymB megaplasmid from the N2-fixing endosymbiont Sinorhizobium meliloti. Proc. Natl Acad. Sci. USA
98, 9889–9894.
|
| |
| 35. |
Bush, K. and Miller, G. H. (1998) Bacterial enzymatic resistance: β-lactamases and aminoglycoside-modifying enzymes. Curr. Opin. Microbiol.
1, 509–515.
|
| |
| 36. |
Craig, N. L., Craigie, R., Gellert, M., and Lambowitz, A. M. (eds.) (2002) Mobile DNA II, American Society for Microbiology, Washington DC.
|
| |
| 37. |
Silver, S. (1996) Bacterial resistances to toxic metal ions—a review. Gene
179, 9–19.
|
| |
| 38. |
Stephens, C. and Murray, W. (2001) Pathogen evolution: how good bacteria go bad. Curr. Biol.
11, R53–R56.
|
| |
| 39. |
Tan, H. M. (1999) Bacterial catabolic transposons. Appl. Microbiol. Biotechnol.
51, 1–12.
|
| |
| 39a. |
James, R., Kleanthous, C., and Moore, G. R. (1996) The biology of E colicins: paradigms and paradoxes. Microbology
142, 1569–1580.
|
| |
| 39b. |
Belogurov, A.A., Delver, E. P., Agafonova, O. V., et al. (2000) Antirestriction protein Ard (Type C) encoded by IncW plasmid
pSa has a high similarity to the ‘protein transport’ domain of TraC1 primase of promiscuous plasmid RP4. J. Mol. Biol.
296, 969–977.
|
| |
| 40. |
Helgason, E., Okstad, O. A., Caugant, D. A., et al. (2000) Bacillus anthracis, Bacillus cereus, and Bacillus thuringiensis—one species on the basis of genetic evidence. Appl. Environ. Microbiol.
66, 2627–2630.
|
| |
| 41. |
del Solar, G., Giraldo, R., Ruiz-Echevarria, M. J., e al. (1998) Replication and control of circular bacterial plasmids. Microbiol. Mol. Biol. Rev.
62, 434–464.
|
| |
| 42. |
Kelman, Z. and O’Donnell, M. (1995) DNA polymerase III holoenzyme: structure and function of a chromosomal replicating machine.
Annu. Rev. Biochem.
64, 171–200.
|
| |
| 42a. |
Burian, J., Guller, L., Macor, M., et al. (1997) Small crytic plasmids of multiplasmid, clinical Escherichia coli. Plasmid
37, 2–14.
|
| |
| 43. |
Caspi, R., Pacek, M., Consiglieri, G., et al. (2001) A broad host range replicon with different requirements for replication
initiation in three bacterial species. EMBO J.
20, 3262–3271.
|
| |
| 44. |
Chattoraj, D. K. (2000) Control of plasmid DNA replication by iterons: no longer paradoxical. Mol. Microbiol.
37, 467–476.
|
| |
| 45. |
Messer, W. and Weigel, C. (1997) DnaA initiator—also a transcription factor. Mol. Microbiol.
24, 1–6.
|
| |
| 46. |
Cesareni, G., Helmer-Citterich, M., and Castagnoli, L. (1991) Control of ColE1 plasmid replication by antisense RNA. Trends Genet.
7, 230–235.
|
| |
| 47. |
Khan, S. A. (2000) Plasmid rolling-circle replication: recent developments. Mol. Microbiol.
37, 477–484.
|
| |
| 48. |
te Riele, H., Michel, B., and Ehrlich, S. D. (1986) Are single-stranded circles intermediates in plasmid DNA replication?
EMBO J.
5, 631–637.
|
| |
| 49. |
Pogliano, J., Ho, T. Q., Zhong, Z., and Helinski, D. R. (2001) Multicopy plasmids are clustered and localized in Escherichia coli. Proc. Natl Acad. Sci. USA
98, 4486–4491.
|
| |
| 50. |
Bignell, C. and Thomas, C. M. (2001) The bacterial ParA–ParB partitioning proteins. J. Biotechnol.
91, 1–34.
|
| |
| 51. |
Moller-Jensen, J., Jensen, R. B., and Gerdes, K. (2000) Plasmid and chromosome segregation in prokaryotes. Trends Microbiol.
8, 313–320.
|
| |
| 52. |
Gordon, G.S. and Wright, A. (2000) DNA segregation in bacteria. Annu. Rev. Microbiol.
54, 681–708.
|
| |
| 53. |
Arber, W. (2000) Genetic variation: molecular mechanisms and impact on microbial evolution. FEMS Microbiol. Rev.
24, 1–7.
|
| |
| 54. |
Summers, D. K., Beton, C. W., and Withers, H. L. (1993) Multicopy plasmid instability: the dimer catastrophe hypothesis. Mol. Microbiol.
8, 1031–1038.
|
| |
| 55. |
van Duyne, G. D (2001) A structural view of Cre-loxp site-specific recombination. Annu. Rev. Biophys. Biomol. Struct.
30, 87–104.
|
| |
| 56. |
Barre, F. X., Soballe, B., Michel, B., et al. (2001) Circles: the replication-recombination-chromosome segregation connection.
Proc. Natl Acad. Sci. USA
98, 8189–8195.
|
| |
| 57. |
Engelberg-Kulka, H. and Glaser, G. (1999) Addiction modules and programmed cell death and antideath in bacterial cultures.
Annu. Rev. Microbiol.
53, 43–70.
|
| |
| 58. |
Gerdes, K. (2000) Toxin-antitoxin modules may regulate synthesis of macromolecules during nutritional stress. J. Bacteriol.
182, 561–572.
|
| |
| 59. |
Gerdes, K., Gultyaev, A. P., Franch, T., et al. (1997) Antisense RNA-regulated programmed cell death. Annu. Rev. Genet.
31, 1–31.
|
| |
| 60. |
Holcik, M. and Iyer, V. N. (1997) Conditionally lethal genes associated with bacterial plasmids. Microbiology
143, 3403–3416.
|
| |
| 61. |
Couturier, M., Bahassi, el-M., and van Melderen, L. (1998) Bacterial death by DNA gyrase poisoning. Trends Microbiol.
6, 269–275.
|
| |
| 62. |
Tortosa, P. and Dubnau, D. (1999) Competence for transformation: a matter of taste. Curr. Opin. Microbiol.
2, 588–592.
|
| |
| 63. |
Sternberg, N. L. and Maurer, R. (1991) Bacteriophage-mediated generalized transduction in Escherichia coli and Salmonella typhimurium. Methods Enzymol.
204, 18–43.
|
| |
| 64. |
Lanka, E. and Wilkins, B. M. (1995) DNA processing reactions in bacterial conjugation. Annu. Rev. Biochem.
64, 141–169.
|
| |
| 65. |
Zechner, E. L., de la Cruz, F., Eisenbrandt, R., et al. (2000) Conjugative-DNA transfer processes, in The Horizontal Gene Pool (Thomas, C. M., ed.), Harwood Academic, Amsterdam, pp. 87–174.
|
| |
| 66. |
Charlebois, R. L., She, Q., Sprott, D. P., et al. (1998) Sulfolobus genome: from genomics to biology. Curr. Opin. Microbiol.
1, 584–588.
|
| |
| 67. |
Trieu-Cuot, P., Derlot, E., and Courvalin, P. (1993) Enhanced conjugative transfer of plasmid DNA from Escherichia coli to Staphylococcus aureus and Listeria monocytogenes. FEMS Microbiol. Lett.
109, 19–23.
|
| |
| 68. |
Bates, S., Cashmore, A. M., and Wilkins, B. M. (1998) IncP plasmids are unusually effective in mediating conjugation of Escherichia coli and Saccharomyces cerevisiae: involvement of the Tra2 mating system J. Bacteriol.
180, 6538–6543.
|
| |
| 69. |
Christie, P. J. (1997) Agrobacterium tumefaciens T-complex transport apparatus: a paradigm for a new family of multifunctional transporters in eubacteria. J. Bacteriol.
179, 3085–3094.
|
| |
| 70. |
Dunny, G. M. and Leonard, B. A. (1997) Cell–cell communication in gram-positive bacteria. Annu. Rev. Microbiol.
51, 527–564.
|
| |
| 71. |
Byrd, D. R. and Matson, S. W. (1997) Nicking by transesterification: the reaction catalysed by a relaxase. Mol. Microbiol.
25, 1011–1022.
|
| |
| 71a. |
Harris, R. L., Sholl, K. A., Conrad, M. N., et al. (1999) Interaction between the F plasmid TraA (F-pilin) and TraQ proteins.
Mol. Microbiol.
34, 780–791.
|
| |
| 72. |
Osborn, M., Bron, S., Firth, N., et al. (2000) The evolution of bacterial plasmids, in The Horizontal Gene Pool (Thomas, C. M., ed.), Harwood Academic, Amsterdam, pp. 301–361.
|
| |
| 73. |
Burland, V., Shao, Y., Perna, N. T., et al. (1998) The complete DNA sequence and analysis of the large virulence plasmid of
Escherichia coli O157∶H7. Nucleic Acids Res.
26, 4196–4204.
|
| |
| 74. |
Bingle, L. E. and Thomas, C. M. (2001) Regulatory circuits for plasmid survival. Curr. Opin. Microbiol.
4, 194–200.
|
| |