| 1. |
Auche, A. 1908. Comptes Rendus De Soeiete Biologie 64:297–298.
|
| |
| 2. |
Berkelman, T.R. and J.C. Lagarias. 1986. Visualization of bilin-linked peptides and proteins in polyacrylamide gels. Anal. Biochem. 156:194–201.
|
| |
| 3. |
Bhoo, S.H., T. Hirano, H.Y. Jeong, J.G. Lee, M. Furuya, and P.S. Song. 1997. Phytochrome photochromism probed by site-directed mutations and chromophore esterification. J. Am. Chem. Soc. 119:11717–11718.
|
| |
| 4. |
Boylan, M. and P. Quail. 1989. Oat Phytochrome is biologically active in transgenic tomatoes. Plant Cell 1:765–773.
|
| |
| 5. |
Clack, X, S. Mathews, and R.A. Sharrock. 1994. The phytochrome apoprotein family in Arabidopsis is encoded by five genes—the sequences and expression of PhyD and PhyE. Plant Mol. Biol. 25:413–427.
|
| |
| 6. |
Cornejo, J. and S.I. Beale. 1997. Phycobilin biosynthetic reactions in extracts of cyanobacteria. Photosynth. Res. 51:223–230.
|
| |
| 7. |
Cornejo, J., S.I. Beale, MJ. Terry, and J.C. Lagarias. 1992. Phytochrome assembly—the structure and biological activity of 2(R),3(E)—phytochromobilin derived from phycobiliproteins.
J. Biol. Chem. 267:14790–14798.
|
| |
| 8. |
Davis, S.J., A.V. Vener, and R.D. Vierstra. 1999. Bacteriophytochromes: phytochrome-like photoreceptors from nonphotosynthetic eubacteria. Science 286: 2517–2520.
|
| |
| 9. |
Deforce, L., M. Furuya, and P.S. Song. 1993. Mutational analysis of the pea phytochrome a chromophore pocket—chromophore assembly with apophytochrome A and photoreversibility.
Biochemistry 32:14165–14172.
|
| |
| 10. |
Deforce, L., K.I. Tomizawa, N. Ito, D. Farrens, P.S. Song, and M. Furuya. 1991. In vitro assembly of apophytochrome and apophytochrome deletion mutants expressed in yeast with phycocyanobilin. Proc. Nad. Acad.
Sci. USA 55:10392–10396.
|
| |
| 11. |
Eichenberg, K., T. Kunkel, T. Kretsch, V. Speth, and E. Schafer. 1999. In vivo characterization of chimeric phytochromes in yeast. J. Biol. Chem. 274:354–359.
|
| |
| 12. |
Elich, T.D. and J.C. Lagarias. 1988. 4-Amino-5-hexynoic acid—a potent inhibitor of tetrapyrrole biosynthesis in plants. Plant Physiol. 88:747–751.
|
| |
| 13. |
Elich, T.D. and J.C. Lagarias. 1989. Formation of a photoreversible phycocyanobilin-apophytochrome adduct in vitro. J. Biol. Chem. 264:12902–12908.
|
| |
| l4. |
Elich, T.D. and J.C. Lagarias. 1987. Phytochrome chromophore biosynthesis. Both 5-aminolevulinic acid and biliverdin overcome inhibition by gabaculine
in etiolated Avena sativa L. seedlings. Plant Physiol. 84:304–310.
|
| |
| 15. |
Elich, T.D., A.E McDonagh, L.A. Palma, and J.C. Lagarias. 1989. Phytochrome chromophore biosynthesis. Treatment of tetrapyrrole-deficient Avena explants with natural and non-natural bilatrienes leads to formation of spectrally active holoproteins. J. Biol. Chem. 264:183–189.
|
| |
| 16. |
Fodor, S.P.A., J.C. Lagarias, and R.A. Mathies. 1990. Resonance Raman analysis of the Pr and Pfr forms of phytochrome. Biochemistry 29:11141–11146.
|
| |
| 17. |
Furuya, M. 1993. Phytochromes—their molecular species, gene families, and functions. Ann. Rev. Plant Physiol. Plant Mol. Biol. 44:617–645.
|
| |
| 18. |
Grimm, R., G.K. Donaldson, SM Vandervies, E. Schafer, and A.A. Gatenby. 1993. Chaperonin-mediated reconstitution of the phytochrome photoreceptor. J. Biol. Chem. 268:5220–5226.
|
| |
| 19. |
Gross, J., M. Seyfried, L. Fukshansky, and E. Schaefer. 1984. In vivo spectrophotometry, p. 131–158. In H. Smith and M.G. Holmes (Eds.), Techniques in Photomorphogenesis. Academic Press, New York.
|
| |
| 20. |
Hill, C, W. Gartner, P. Towner, S.E. Braslavsky, and K. Schaffner. 1994. Expression of phytochrome apoprotein from Avena sativa in Escherichia coli and formation of photoactive chromoproteins by assembly with phycocyanobilin. Eur. J. Biochem. 223:69–77.
|
| |
| 21. |
Hughes, J., T. Lamparter, F. Mittmann, E. Hartmann, W. Gartner, A. Wilde, and T. Borner. 1997. A prokaryotic phytochrome. Nature 386:663–663.
|
| |
| 22. |
Jones, A.M., C.D. Allen, G. Gardner, and P.H. Quail. 1986. Synthesis of phytochrome apoprotein and chromophore are not coupled obligatorily. Plant Physiol. 87:1014–1016.
|
| |
| 23. |
Jones, A.M., and M.D. Edgerton. 1994. The anatomy of phytochrome, a unique photoreceptor in plants. Sem. Cell Biol. 5:295–302.
|
| |
| 24. |
Jones, A.M., R.D. Vierstra, S.M. Daniels, and P.H. Quail. 1985. The role of separate domains in the structure of phytochrome from etiolated Avena sativa L. Planta. 764:505–506.
|
| |
| 25. |
Kehoe, D.M. and A.R. Grossman. 1996. Similarity of a chromatic adaptation sensor to phytochrome and ethylene receptors. Science 273:1409–1412.
|
| |
| 26. |
Kendrick, R.E. and G.H.M. Kronenberg (Eds.). 1994. Photomorphogenesis in Plants, 2nd ed. Martinus Nijhoff Publishers, Dordrecht, The Netherlands.
|
| |
| 27. |
Kolukisaoglu, H.U., S. Marx, C. Wiegmann, S. Hanelt, and H.A.W. Schneider-Poetsch. 1995. Divergence of the phytochrome gene family predates angiosperm evolution and suggests that Selaginella and Equisetum
arose prior to Psilotum. J. Mol. Evol. 47:329–337.
|
| |
| 28. |
Kunkel, T., V. Speth, C. Buche, and E. Schafer. 1995. In vivo characterization of phytochrome-phycocyanobilin adducts in yeast. J. Biol. Chem. 270:20193–20200.
|
| |
| 29. |
Kunkel, T., K. Tomizawa, R. Kern, M. Furuya, N.H. Chua, and E. Schafer. 1993. In vitro formation of a photoreversible adduct of phycocyanobilin and tobacco apophytochrome B. Eur. J. Biochem. 275:587–594.
|
| |
| 30. |
Lagarias, D.M., S.H. Wu, and J.C. Lagarias. 1995. Atypical phytochrome gene structure in the green alga mesotaenium caldariorum. Plant Mol. Biol. 25:1127–1142.
|
| |
| 31. |
Lagarias, J.C, J.M. Kelly, K.L. Cyr, and W.O. Smith, Jr. 1987. Comparative photochemical analysis of highly purified 124 kilodalton oat and rye phytochromes in vitro. Photochem.
Photobiol. 46:5–13.
|
| |
| 32. |
Lagarias, J.C and D.M. Lagarias. 1989. Self assembly of synthetic phytochrome holoprotein in vitro. Proc. Natl. Acad. Sci. USA 86:5778–5780.
|
| |
| 33. |
Lagarias, J.C. and F.M. Mercurio. 1985. Structure function studies on phytochrome. Identification of light-induced conformational changes in 124-kDa Avena phytochrome in vitro. J. Biol. Chem. 260:2415–2423.
|
| |
| 34. |
Lagarias, J.C. and H. Rapoport. 1980. Chromopeptides from phytochrome. The structure and linkage of the Pr form of the phytochrome chromophore. J. Am. Chem.
Soc. 702:4821–4828.
|
| |
| 35. |
Lamparter, T., F Mittmann, W. Gartner, T. Borner, E. Hartmann, and J. Hughes. 1997. Characterization of recombinant phytochrome from the cyanobacterium Synechocystis. Proc. Natl. Acad. Sci. USA 54:11792–11797.
|
| |
| 36. |
Lapko, V.N. and P.S. Song. 1995. A simple and improved method of isolation and purification for native oat phytochrome. Photochem. Photobiol. 62:194–198.
|
| |
| 37. |
Li, L. and JC Lagarias. 1992. Phytochrome assembly—defining chromophore structural requirements for covalent attachment and photoreversibility.
J. Biol. Chem. 267:19204–19210.
|
| |
| 38. |
Li, L. and J.C Lagarias. 1994. Phytochrome assembly in living cells of the yeast Saccharomyces cerevisiae. Proc. Natl. Acad. Sci. USA 57:12535–12539.
|
| |
| 39. |
Li, L., J.T. Murphy, and J.C. Lagarias. 1995. Continuous fluorescence assay of phytochrome assembly in vitro. Biochem. 34:7923–7930.
|
| |
| 40. |
Lindner, I., B. Knipp, S.E. Braslavsky, W. Gartner, and K. Schaffner. 1998. A novel chromophore selectively modifies the spectral properties of one of the two stable states of the plant photoreceptor
phytochrome. Angew. Chem., Int. Ed. 37:1843–1846.
|
| |
| 41. |
Litts, J.C., J.M. Kelly, and J.C. Lagarias. 1983. Structure-function studies on phytochrome. Preliminary characterization of highly purified phytochrome from Avena sativa enriched in the 124-kilodalton species. J. Biol. Chem. 258:11025–11031.
|
| |
| 42. |
McDowell, M.T. and J.C. Lagarias. Purification and properties of phytochromobilin synthase from etiolated oat seedlings. Plant Physiol. (In press).
|
| |
| 43. |
Murphy, J.T. and J.C. Lagarias. 1997. The phytofluors: a new class of fluorescent protein probes. Curr. Biol. 7:870–876.
|
| |
| 44. |
Murphy, J.T. and J.C. Lagarias. 1997. Purification and characterization of recombinant affinity peptide-tagged oat phytochrome A. Photochem. Photobiol.
65:750–758.
|
| |
| 45. |
Pratt, L.H., M.M. Cordonnier-Pratt, P.M. Kelmenson, G.I. Lazarova, T. Kubota, and R.M. Alba. 1997. The phytochrome gene family in tomato (Solarium lycopersicum L). Plant Cell Environ. 20:672–677.
|
| |
| 46. |
Pratt, L.H., J.E. Wampler, and E.S. Rich, Jr. 1984. An automated dual-wavelength spectrophotometer optimized for phytochrome assay. Anal. Instrum. 73:269–287.
|
| |
| 47. |
Quail, P.H., M.T. Boylan, B.M. Parks, T.W. Short, Y. Xu, and D. Wagner. 1995. Phytochromes: photosensory perception and signal transduction. Science 268:675–680.
|
| |
| 48. |
Raps, S. 1990. Differentiation between phycobiliprotein and colorless linker polypeptides by fluorescence in the presence of ZnSO4. Plant Physiol. 92:358–362.
|
| |
| 49. |
Remberg, A., P. Schmidt, S.E. Braslavsky, W. Gartner, and K. Schaffner. 1999. Differential effects of mutations in the chromophore pocket of recombinant phytochrome on chromoprotein assembly and
Pr-to-Pfr photoconversion. Eur. J. Biochem. 266:201–208.
|
| |
| 50. |
Rudiger, W., T. Brandlmeier, I. Bios, A. Gossauer, and J.P. Weller. 1980. Isolation of the phytochrome chromophore. The cleavage reaction with hydrogen bromide. Z. Naturforsch. 35:763–769.
|
| |
| 51. |
Rudiger, W. and F. Lopez-Figueroa. 1992. Photore-ceptors in algae. Photochem. Photobiol. 55:949–954.
|
| |
| 52. |
Rudiger, W., F. Thummler, E. Cmiel, and S. Schneider. 1983. Chromophore structure of the physiologically active form (Pfr) of phytochrome. Proc. Natl. Acad. Sci. USA 80:6244–6248.
|
| |
| 53. |
Sage, L.C. 1992. Pigment of the Imagination: A History of Phytochrome Research. Academic Press, San Diego.
|
| |
| 54. |
Schiff, J.A. 1972. A green safelight for the study of chloroplast development and other photomorphogenetic phenomena. Methods Enzymol.
245:321–322.
|
| |
| 55. |
Schmidt, P., U.H. Westphal, K. Worm, S. Braslavsky, W. Gartner, and K. Schaffner. 1996. Chromophoreprotein interaction controls the complexity of the phytochrome photocycle. J. Photochem. Photobiol. B.
Biol. 34:75–77.
|
| |
| 56. |
Schneider-Poetsch, H.A.W., B. Braun, S. Marx, and A. Schaumburg. 1991. Phytochromes and bacterial sensor proteins are related by structural and functional homologies—hypothesis on phytochrome-mediated
signal-transduction. FEBS Lett. 287:245–249.
|
| |
| 57. |
Schneider-Poetsch, HAW., S. Marx, H.U. Kolukisaoglu, S. Hanelt, and B. Braun. 1994. Phytochrome evolution—phytochrome genes in ferns and mosses. Physiol. Plant. 91:241–250.
|
| |
| 58. |
Song, P.S., M.H. Park, and M. Furuya. 1997. Chromophore: apoprotein interactions in phytochrome A. Plant Cell Environ. 20:707–712.
|
| |
| 59. |
Taylor, B.L. and I.B. Zhulin. 1999. PAS domains: internal sensors of oxygen, redox potential, and light. Microbiol. Mol. Biol. Rev. 63:479–506.
|
| |
| 60. |
Terry, M.J. and J.C. Lagarias. 1991. Holophytochrome assembly—coupled assay for phytochromobilin synthase in organello. J. Biol. Chem. 266:22215–22221.
|
| |
| 61. |
Terry, M.J., M.D. Maines, and J.C. Lagarias. 1993. Inactivation of phytochrome-chromophore and phycobiliprotein-chromophore precursors by rat liver biliverdin reductase.
J. Biol. Chem. 268:26099–26106.
|
| |
| 62. |
Tomizawa, K., J. Stockhaus, N.H. Chua, and M. Furuya. 1995. Spectrophotometric and molecular properties of mutated rice phytochrome A. Plant Cell Physiol. 36:511–516.
|
| |
| 63. |
Vierstra, R.D. 1993. Illuminating phytochrome functions. Plant Physiol. 703:679–684.
|
| |
| 64. |
Wada, M., T. Kanegae, K. Nozue, and S. Fukuda. 1997. Cryptogam phytochromes. Plant Cell Environ. 20:685–690.
|
| |
| 65. |
Wahleithner, J.A., L. Li, and J.C. Lagarias. 1991. Expression and assembly of spectrally active recombinant holophytochrome. Proc. Natl. Acad. Sci. USA 88:10387–10391.
|
| |
| 66. |
Wilde, A., Y. Churin, H. Schubert, and T. Borner. 1997. Disruption of a Synechocystis sp. PCC 6803 gene with partial similarity to phytochrome genes alters growth under changing light qualities. FEBS Lett. 406:89–92.
|
| |
| 67. |
Wu, S.H. and J.C. Lagarias. 1996. The methylotrophic yeast synthesizes a functionally active chromophore precursor of the plant photoreceptor phytochrome.
Proc. Natl. Acad. Sci. USA 93:8989–8994.
|
| |
| 68. |
Wu, S.H., M.T. McDowell, and J.C. Lagarias. 1997. Phycocyanobilin is the natural chromophore precursor of phytochrome from the green alga Mesotaenium caldariorum. J. Biol. Chem. 272:25700–25705.
|
| |
| 69. |
Yeh, K.C. and J.C. Lagarias. 1998. Eukaryotic phytochromes: light-regulated serine/threonine protein kinases with histidine kinase ancestry. Proc. Natl.
Acad. Sci. USA 95:13976–13981.
|
| |
| 70. |
Yeh, K.C., S.H. Wu, J.T. Murphy, and J.C. Lagarias. 1997. A cyanobacterial phytochrome two-component light sensory system. Science 277:1505–1508.
|
| |