| 1. |
Galas D. J. and Schmitz A. (1978) DNAase footprinting—simple method for detection of protein-DNA binding specificity Nucleic Acids Res 5, 3157–3170
|
| |
| 2. |
Lane M. J., Dabrowrak J. C., and Vournakis J. N. (1983) Sequence specificity of actinomycin D and netropsin binding to pBR322
analysed by protection from DNAase I. Proc Natl Acad Sci USA
80, 3260–3264
|
| |
| 3. |
Scamrov A. V. and Beabealashvilh R. Sh. (1983) Binding of actinomycin D to DNA revealed by DNAase I footprinting. FEBS Lett
164, 97–101.
|
| |
| 4. |
Fox K. R. and Waring M. J. (1984) DNA structural variations produced by actinomycin and distainycin as revealed by DNAase
I footprinting Nucleic Acids Res
12, 9271–9285
|
| |
| 5. |
Fox K. R. and Howarth N. R. (1985) Investigations into the sequence-selective binding of mithramycin and related ligands to
DNA Nucleic Acids Res
13, 8695–8714
|
| |
| 6. |
Low C. M. L., Drew H. R., and Waring M. J. (1984) Sequence-specific binding of echinomycin to DNA. evidence for conformational
changes affecting flanking sequences. Nucleic Acids Res
12, 4865–4879
|
| |
| 7. |
Low C. M. L., Olsen R. K., and Waring M. J. (1984) Sequence preferences in the binding to DNA of triosim A and TANDEM as reported
by DNase I footprinting. FEBS Lett
176, 414–419.
|
| |
| 8. |
Chaires J. B., Fox K. R., Herrera J. E., Britt M., and Waring M. J. (1987) Site and sequence specificity of the daunomycin-DNA
interaction Biochemistry
26, 8227–8236
|
| |
| 9. |
Chanes J. B., Herrera J. E., and Waring M. J. (1990) Preferential binding of daunomycm to 5′(A/T)CG and 5′(A/T)GC sequences
revealed by footprinting titration experiments Biochemistry
29, 6145–6153
|
| |
| 10. |
Fox K. R. and Waring M. J. (1986) Nucleotide sequence binding preferences of nogalamycin investigated by DNase I footprinting.
Biochemistry
25, 4349–4356
|
| |
| 11. |
Abu-Daya A., Brown P. M., and Fox K. R. (1995) DNA sequence preferences of several AT-selective minor groove binding ligands
Nucleic Acids Res
23, 3385–3392
|
| |
| 12. |
Cooney M., Czernuszewicz G., Pastel E. H., Flint S. J., and Hogan M. E. (1988) Site-specific oligonucleotide binding represses
transcription of the human c-myc gene in vitro Science
241, 456–459
|
| |
| 13. |
Cheng A-J. and van Dyke M. W. (1994) Oligodeoxyribonucleotide length and sequence effects on intermolecular purine-purme-pyrimidme
triple-helix formation Nucleic Acids Res
22, 4742–4747
|
| |
| 14. |
Fox K. R. and Waring M. J. (1987) The use of micrococcal nuclease as a probe for drug-binding sites on DNA Biochim Biophys Acta
909, 145–155
|
| |
| 15. |
Cons B. M. G. and Fox K. R. (1990) The GC-selective ligand mithramycm alters the structure of (AT), sequences flanking its
binding sites FEBS Lett
264, 100–104
|
| |
| 16. |
Stgman D. S. (1990) Chemical nucleases. Biochemistry
29, 9097–9105
|
| |
| 17. |
Spassky A. and Sigamn D. S. (1985) Nuclease activity of 1,l0 phenanthrolmecopperion. conformational analysis and footprinting
of the lac operon Biochemistry
24, 8050–8056.
|
| |
| 18. |
Van Dyke M. W., Hertzberg R. P., and Dervan P. B. (1982) Map of distamycin, netropsin and actinomycin binding sites on heterogeneous
DNA DNA cleavage inhibition patterns with methidiumpropyl-EDTA-Fe(II). Proc Natl Acad Sci USA
79, 5470–5474
|
| |
| 19. |
Van Dyke M. W. and Dervan P. B. (1983) Chromomycin, mithramycm and ohvomycin binding sites on heterogeneous deoxyribonucleic
acid Footprinting with (methidiumpropyl-EDTA)Iron(II) Biochemistry
22, 2373–2377
|
| |
| 20. |
Hertzberg J. P. and Dervan P. B. (1984) Cleavage of DNA with methidiumpropyl-EDTA-Iron(I1) reaction conditions and product
analyses Biochemistry
23, 3934–3945
|
| |
| 21. |
Van Dyke M. W. and Dervan P. B. (1983) Methidiumpropyl-EDTA.Fe(II) and DNase I footprinting report different small molecule
binding site sizes on DNA Nucleic Acids Res
10, 5555–5567
|
| |
| 22. |
Nielsen P. E., Jeppesen C., and Buchardt O. (1988) Uranyl salts as photochemical agents for cleavage of DNA and probing of
protein DNA contacts FEBS Lett
235, 22–124.
|
| |
| 23. |
Nielsen P. E., Hiort C., Sonmchsen S. H., Buchardt O., Dahl O., and Norden B. (1993) DNA binding and photocleavage by uranyl(VI)(UO2
2+) salts J Am Chem Soc
114, 4967–4975
|
| |
| 24. |
Cons B. M. G. and Fox K. R. (1989) High Resolution hydroxyl radical footprinting of the binding of mithramycin and related
antibiotics to DNA Nucleic Acids Res
17, 5447–5459
|
| |
| 25. |
Churchill M. E. A., Hayes J. J., and Tullms T. D. (1990) Detection of drug binding to DNA by hydroxyl radical footprinting
Relationship of distainycin binding sites to DNA structure and positioned nucleosomes on 5s RNA genes of Xenopus Biochemistry
29, 6043–6050.
|
| |
| 26. |
Portugal J. and Waring M. J. (1987) Hydroxyl radical footprinting of the sequence-selective binding of netropsin and distamycin
to DNA. FEBS Lett
225, 195–200
|
| |
| 27. |
Drew H. R. and Travers A. A. (1984) DNA structural variations in the E colityr T promoter. Cell
37, 491–502
|
| |
| 28. |
Drew H. R. (1984) Structural specificrues of five commonly used DNA nucleases J Mol Biol
176, 535–557
|
| |
| 29. |
Waterloh K. and Fox K. R. (1991) The effects of actinomycin on the structure of dAn dTn and (dA-dT)n regions surrounding its GC binding site: a footprinting study J Biol Chem.
266, 6381–6388.
|
| |
| 30. |
Waterloh K. and Fox K. R. (1991) Interaction of echinomycin with An Tn and (AT)n regions flanking its CG bINding site Nucleic Acids Res
19, 6719–6724
|
| |
| 31. |
Laskowskr M. (1971) DeoxyrlbonucleaseI, in The Enzymes, vol. 4 (Boyer P D, ed), Academice London, pp 289–311.
|
| |
| 32. |
Kunitz M. (1950) Crystallme deoxyribonuclease I isolation and general properties spectrophotometric method for the measurement
of deoxyribonuclease activity. J Gen Physiol
33, 349–369
|
| |
| 33. |
Price P. A. (1975) The essential role of Ca2+ in the activity of bovine pancreatic deoxyribonuclease J Biol Chem
250, 1981–1986
|
| |
| 34. |
Lomonossoff G. P., Butler P. J. G., and Klug A. (1981) Sequence-dependent variation in the conformation of DNA. J Mol Biol
149, 745–760.
|
| |
| 35. |
Hogan M. E., Roberson M. W., and Austin R. H. (1989) DNA flexibility variation may dominate DNase I cleavage Proc Natl Acad Sci USA
86, 9273–9277
|
| |
| 36. |
Brukner I., Jurukovski V., and Savic A. (1990) Sequence-dependent structural variations of DNA revealed by DNase I. Nucleic Acids Res
18, 89l–894
|
| |
| 37. |
Suck D., Oefner C., and Kabasch W. (1984) Three-dimensional structure of bovine pancreatic DNAase I at 2.5A resolution. EMBO J
3, 2423–2430.
|
| |
| 38. |
Suck D. and Oefner C. (1986) Structure of DNaseI at 2Ã
resolution suggests a mechanism for binding to and cutting DNA Nature
321, 620–625.
|
| |
| 39. |
Oefner C. and Suck D. (1986) Crystallographic refinement and structure of DNAase 1 at 2A resolution. J Mol Biol.
192, 605–632.
|
| |
| 40. |
Suck D., Lahm A., and Oefner C. (1988) Structure refined to 2A of anicked octanulceotide complex with DNAase I Nature
332, 464–468
|
| |
| 41. |
Weston S. A., Lahm A., and Suck D. (1992) X-ray structure of the DNase I-d(GGTATACC)2 complex at 2 3k resolution. J Mol Biol
226, 1237–1256
|
| |
| 42. |
Lahm A. and Suck D. (1991) DNase I-induced DNA conformation. 2A structure of a DNase I-octamer complex J Mol Biol
221, 645–667
|
| |
| 43. |
Herrera J. E. and Chaires J. B. (1994) Characterization of preferred Deoxyribo-nuclease I cleavage sites J Mol Biol
236, 405–411
|
| |
| 44. |
Bailly C., Donker I. O., Gentle D., Thornalley M., and Waring M. J. (1994) Sequence selective binding to DNA of cis-and trans-butamidme
analogues of the anti-Pneumocystis carmn pneumonia drug pentamidme. Mol Pharm
46, 313–322
|
| |
| 45. |
Bailly C., Gentle D., Hamy F., Purcell M., and Waring M. J. (1994) Localized chemical reactivity in DNA associated with the
sequence specific bisintercalation of echinomycin Biochem J
300, 165–173
|
| |
| 46. |
Ridge G. S., Bailly C., Graves D. E., and Waring M. J. (1994) Daunomycin modifies the sequence-selective recognition of DNA
by actinomycin. Nucleic Acids Res.
22, 5241–5246.
|
| |
| 47. |
Waterloh K. and Fox K. R. (1992) Secondary (non-GpC) binding sites for actinomycin on DNA. Biochim Biophys Acta
1131, 300–306
|
| |
| 48. |
Fletcher M. C. and Fox K. R. (1993) Visualising the kinetics of dissociation of actinomycin from individual binding sites
in mixed sequence DNA by DNase I footprinting Nucleic Acids Res
21, 1339–1344
|
| |
| 49. |
Fletcher M. C. and Fox K. R. (1996) Dissociation kinetics of echinomycin from CpG sites in different sequence environment
Biochemistry
35, 1064–1075
|
| |
| 50. |
Huang Y.-Q., Rehfuss R. P., LaPlante S. R., Boudreau E Borer P. N., and Lane M. J. (1988) actinomycin D Induced DNAase I cleavage
enhancement caused by sequence specific propagation of an altered DNA structure Nucleic Acids Res
16, 11,125–11,139
|
| |
| 51. |
Bishop K. D., Borer P. N., Huang Y.-Q., and Lane M. J. (1991) Actinomycin D induced DNase I hypersensitivity and asymmetric
structure transmission in a DNA hexadecamer Nucleic Acids Res
19, 87l–875
|
| |
| 52. |
Maxam A. M. and Gilbert W. (1980) Sequencing end labelled DNA with base-specific chemical cleavages Methods Enzymol
65, 499–560
|
| |
| 53. |
Lavesa M., Olsen R. K., and Fox K. R. (1993) Sequence spectfic binding of [N-MeCys3,N-MeCys7] TANDEM to TpA. Biochem J
289, 605–607.
|
| |
| 54. |
Ward B. Rehfuss R., Goodisman J., and Dabrowtak J. C. (1988) Rate enhancements in the DNase I footprinting experiment Nucleic Acids Res
16, 1359–1369
|
| |
| 55. |
Ward B. Rehfuss R. Goodisman J., and Dabrowtak J. D. (1988) Determination of netropsin-DNA binding constants from footprinting
data Biochemistry
27, 1198–1205
|
| |
| 56. |
Fox K. R. and Waring M. J. (1987) footprinting at low temperatures evidence that ethidium and other sample intercalators can
discriminate between different nucleotide sequences Nucleic Acids Res
15, 49l–507
|
| |