Dideoxy Sequencing Reactions Using T7 Polymerase
| Abstract |
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The chain termination DNA sequencing procedure introduced by Sanger and coworkers in 1977 (1) meant a revolutionary achievement in fast, simple, and accurate deciphering of DNA fragments. Long stretches of this nucleic
acid could from then on be sequenced within a relatively short time. The method makes use of the enzymatic elongation of specific
oligodeoxyribonucleotide primers that are complementary to a specific sequence of the DNA template. Four different reaction
mixes each contain all four conventional deoxyribonucleotide triphosphates (dNTPs) plus a small amount of one dideoxyribonucleotide
triphosphate (ddNTP), an analog that leads to chain termination since the lacking 3'-hydroxyl group prevents formation of
a phosphodiester bond with a succeeding nucleotide. The four assays each contain a different dideoxynucleotide triphosphate.
The chain extension reaction thus competes with the infrequent but specific termination by a ddNTP. This leads to a mixture
of DNA fragments of varying lengths that all possess the same 5'-end owing to the common primer. Since one of the dNTPs contains
a radioactive isotope (either 32P or 35S) these fragments become radioactively labeled and can be detected by autoradiography after separation by gel electrophoresis.
The corresponding sequence is derived from the band pattern of the four different reaction mixtures. Single-stranded phage
and denatured double-stranded plasmid DNA can serve as a template, thus opening the possibility to use a large variety of
vectors for cloning. Primers that are complementary to various regions of the multicloning sites of these vectors are commercially
available from a number of molecular biological companies or can easily be synthesized in the lab (compare
Chapter 11).
Book Title: DNA Sequencing Protocols
Series: Methods in Molecular Biology | Volume: 23 | Pub. Date: Aug-23-1993 | Page Range: 91-102 | DOI: 10.1385/0-89603-248-5:91
Subject: Genetics/Genomics
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