In this chapter, we describe the use of SuperHirn and MSight, two complementary tools developed to the processing of label-free LC/MS data in view of the quantitation of proteomics samples. While MSight is mainly dedicated to the visualisation and navigation into LC/MS data, SuperHirn is specialised in peak detection, normalisation and alignment of LC/MS runs. These two tools can be used in a complementary way and one of the possible usages is described here.
Affiliation(s): (1) Proteome Informatics Group, Swiss Institute of Bioinformatics, Geneva, Switzerland
Series: Methods in Molecular Biology | Volume: 696 | Year: 2011 | Page Range: 369-377 | DOI: 10.1007/978-1-60761-987-1_24
Subject: Protein Science