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To facilitate the study of plasmids and their roles in human and animal health, environmental processes, and microbial adaptation
and evolution, plasmid classification has been an important focus of plasmid biologists over the years. Initial schemes were
based on the ability of a plasmid to inhibit F fertility, but due to certain limitations, these methods were superseded by
incompatibility or Inc typing. Inc typing classifies plasmids by their ability to stably coexist with other plasmids in the
same bacterial strain, a trait that is dependent on their replication machinery. Coresident plasmids are incompatible when
they share the same replication mechanisms. Since plasmid replicon type determines Inc group, the terms Inc and Rep type to describe plasmid types are used interchangeably. Initially, Inc typing relied on introduction of a plasmid into a
strain carrying another plasmid and determining whether both plasmids were stably maintained in the progeny. However, physical
Inc typing is time consuming and not easily used in large-scale applications. Some of these shortcomings were addressed through
development of a classification scheme based on identification of basic replicons using DNA hybridization and of a polymerase
chain reaction (PCR)-based method of replicon typing enabling plasmid typing on a large scale. Here, we elaborate on a recently
described PCR-based typing method that streamlines the typing of plasmids occurring among the Enterobacteriaceae; we believe
the method will prove applicable to the study of plasmids on a large scale.
Affiliation(s): (2) Department of Veterinary and Biomedical Sciences, University of Minnesota, 205, Veterinary Science, Saint Paul, MN, USA
(3) Department of Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA
(3) Department of Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA
Series: Methods in Molecular Biology | Volume: 551 | Pub. Date: Feb-01-2009 | Page Range: 27-35 | DOI: 10.1007/978-1-60327-999-4_3
Subject: Cell Biology
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