| Abstract |
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Defining the precise promoter DNA sequence motifs where nuclear receptors and other transcription factors bind is an essential
prerequisite for understanding how these proteins modulate the expression of their specific target genes. The purpose of this
chapter is to provide the reader with a detailed guide with respect to the materials and the key methods required to perform
this type of DNA-binding analysis. Irrespective of whether starting with purified DNA-binding proteins or somewhat crude cellular
extracts, the tried-and-true procedures described here will enable one to accurately access the capacity of specific proteins
to bind to DNA as well as to determine the exact sequences and DNA contact nucleotides involved. For illustrative purposes,
we primarily have used the interaction of the androgen receptor with the rat probasin proximal promoter as our model system.
Affiliation(s): (3) Department of Urologic Sciences, Prostate Center, Vancouver General Hospital, University of British Columbia, Vancouver, BC, Canada
Series: Methods in Molecular Biology | Volume: 505 | Pub. Date: Dec-01-2008 | Page Range: 97-122 | DOI: 10.1007/978-1-60327-575-0_6
Subject: Cell Biology
Key Words: Androgen receptor - Probasin promoter - Nuclear extracts - EMSA - DNase I - Methylation interference - Methylation protection
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