| Abstract |
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Pyrosequencing is a real-time DNA sequencing method. It is based on the transformation of pyrophosphates, released during
DNA elongation by DNA polymerase, into measurable light. During DNA elongation, a single pyrophosphate molecule is released
following incorporation of a single nucleotide. In the pyrosequencing reaction, released pyrophosphates are then rapidly converted
by sulfurylase to adenosine triphosphate, which in turn is utilized by luciferase to produce light. Within standardized conditions,
this reaction is accomplished in a few milliseconds and the light produced can be registered with a CCD camera. Therefore,
it becomes possible to quantitatively measure the nucleotides incorporated. This approach has been automated in different
platforms and can be used for a wide variety of applications, such as single-nucleotide polymorphism (SNP) genotyping, DNA
sequencing, loss of heterozygosity analysis, and CpG methylation studies. Here we describe the entire process, focusing our
attention on SNP genotyping, and giving examples of some other applications.
Affiliation(s): (1) Department of Structural Genomics, Neocodex SL, Seville, Spain
(2) Centro Andaluz de Biología del Desarrollo, Consejo Superior de Investigaciones Científicas-Universidad Pablo de Olavide, Seville, Spain
(3) Department of Structural Genomics, Neocodex SL. Avda. Charles Darwin, Seville, Spain
(2) Centro Andaluz de Biología del Desarrollo, Consejo Superior de Investigaciones Científicas-Universidad Pablo de Olavide, Seville, Spain
(3) Department of Structural Genomics, Neocodex SL. Avda. Charles Darwin, Seville, Spain
Series: Methods in Molecular Biology | Volume: 578 | Pub. Date: Sep-01-2008 | Page Range: 123-133 | DOI: 10.1007/978-1-60327-411-1_7
Subject: Genetics/Genomics
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