| 1. |
Blake, J. A., Bult, C. J. (2006) Beyond the data deluge: data integration and bio-ontologies. J Biomed Inform 39, 314–320.
|
| |
| 2. |
The Gene Ontology Consortium (2000) Gene Ontology: tool for the unification of biology. Nat Genet 25, 25–29.
|
| |
| 3. |
The Gene Ontology Consortium (2001) Creating the Gene Ontology resource: design and implementation. Genome Res 11, 1425–1433.
|
| |
| 4. |
The Gene Ontology Consortium (2004) The Gene Ontology (GO) database and informatics resource. Nucleic Acids Res 32, D258–D261.
|
| |
| 5. |
Blake, J. A., Harris, M. A. (2003) The Gene Ontology project: structured vocabularies for molecular biology and their application
to genome and expression analysis, in (Bax-evanis, A. D., Davison, D. B., Page, R. D. M., et al., eds.) Current Protocols in Bioin-formatics. John Wiley & Sons, New York.
|
| |
| 6. |
Harris, M. A., Lomax, J., Ireland, A., et al. (2005) The Gene Ontology project. In Subramaniam, S. (ed.) Encyclopedia of Genetics, Genomics, Proteomics and Bioin-formatics. John Wiley & Sons, New York.
|
| |
| 7. |
The Gene Ontology Consortium (2006) The Gene Ontology (GO) project in 2006. Nucleic Acids Res 34, D322–D326.
|
| |
| 8. |
Rojas, I., Ratsch, E., Saric, J., et al. (2004) Notes on the use of ontologies in the biochemical domain. In Silico Biol 4, 89–96.
|
| |
| 9. |
Burgun, A. (2006) Desiderata for domain reference ontologies in biomedicine. J Biomed Inform 39, 307–313.
|
| |
| 10. |
Yu, A. C. (2006) Methods in biomedical ontology. J Biomed Inform 39, 252–266.
|
| |
| 11. |
Blake, J. (2004) Bio-ontologies—fast and furious. Nat Biotechnol 22, 773–774.
|
| |
| 12. |
Bard, J. B. L., Rhee, S. Y. (2004) Ontologies in biology: design, applications and future challenges. Nat Rev Genet 5, 213–222.
|
| |
| 13. |
Wroe, C., Stevens, R. (2006) Ontologies for molecular biology, in (Lengauer, T., ed.), Bioinformatics: From Genomes to Therapies. Wiley-VCH, Weinheim, Germany.
|
| |
| 14. |
Gruber, T. R. (1993) A translation approach to portable ontology specifications. Knowl Acq 5, 199–220.
|
| |
| 15. |
Jones, D. M., Paton, R. (1999) Toward principles for the representation of hierarchical knowledge in formal ontologies. Data Knowl Eng 31, 99–113.
|
| |
| 16. |
Schulze-Kremer, S. (2002) Ontologies for molecular biology and bioinformatics. In Silico Biol 2, 179–193.
|
| |
| 17. |
Stevens, R., Goble, C. A., Bechhofer, S. (2000) Ontology-based knowledge representation for bioinformatics. Brief Bioin-form 1, 398–414.
|
| |
| 18. |
Lewis, S. E. (2005) Gene Ontology: looking backwards and forwards. Genome Biol 6, 103.
|
| |
| 19. |
Smith, B., Ashburtner, M., Rosse, C., et al. (2007) The OBO Foundry: coordinated evolution of ontologies to support biomedical
data integration. Nat Biotechnol 25, 1251–1255.
|
| |
| 20. |
Bard, J., Rhee, S. Y., Ashburner, M. (2005) An ontology for cell types. Genome Biol 6, R21.
|
| |
| 21. |
Smith, B., Ceusters, W., Klagges, B., et al. (2005) Relations in biomedical ontologies. Genome Biol 6, R46.
|
| |
| 22. |
Wroe, C. J., Stevens, R., Goble, C. A., et al. (2003) A methodology to migrate the gene ontology to a description logic environment
using DAML+OIL. Pac Symp Bio-comput 2003, 624–635.
|
| |
| 23. |
Bada, M., Stevens, R., Goble, C., et al. (2004) A short study on the success of the Gene Ontology. J Web Semantics 1, 235–240.
|
| |
| 24. |
Mungall, C. J. (2005) Obol: integrating language and meaning in bio-ontologies. Comp Funct Genomics 5, 509–520.
|
| |
| 25. |
Lord, P., Stevens, R. D., Goble, C. A., et al. (2005) Description logics: OWL and DAML + OI, in (Subramaniam, S., ed.), Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics. John Wiley & Sons, New York.
|
| |
| 26. |
Hill, D. P., Blake, J. A., Richardson, J. E., et al. (2002) Extension and integration of the Gene Ontology (GO): combining
go vocabularies with external vocabularies. Genome Res 12, 1982–1991.
|
| |