Reducing Sample Complexity in Proteomics
by Chromatofocusing with Simple Buffer Mixtures
| Abstract |
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Chromatofocusing has many potential applications in the field of proteomics, such as for the isolation and removal of major
sample components to facilitate the analysis of low-abundance components, and for sample prefractionation prior to a subsequent
separation using SDS-PAGE, narrow-pI-range 2D-PAGE, or additional chromatography steps. However, the chromatofocusing techniques that are most commonly used employ
propriety polyampholyte elution buffers and highly specialized column packings, both of which limit the use of chromatofocusing
in practice. To expand the range of application for this technique, this chapter considers chromatofocusing methods which
employ common ion-exchange column packings and elution buffers which are simple mixtures of readily available buffering species.
Of particular interest is the use of chromatofocusing with a multistep pH gradient for the fractionation of protein mixtures
into narrow-pI-range fractions. The cross-contamination characteristics of these fractions using SDS-PAGE are also assessed.
Book Title: 2D PAGE: Sample Preparation and Fractionation
Series: Methods in Molecular Biology | Volume: 424 | Pub. Date: Jan-25-2008 | Page Range: 187-203 | DOI: 10.1007/978-1-60327-064-9_16
Subject: Genetics/Genomics
Key Words: Chromatofocusing - multistep pH gradient - prefractionation - proteomics - simple elution buffer - reducing sample complexity
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