9. SPARK: A New Peptidyl Transferase Activity Assay
| Abstract |
|
|
The formation of peptide bonds is the central chemical reaction during protein synthesis and is catalyzed by the peptidyl
transferase center residing in the large ribosomal subunit. This active site is composed of universally conserved rRNA nucleosides.
The peptidyl transferase center is by far the most frequently used target site of natural antibiotics in the cell. Here we
describe a novel, simple, and convenient method to assess peptide bond formation which we named SPARK. The basic principle
of SPARK is the use of two reaction substrates that closely resemble the natural tRNA substrates (one is biotinylated and
the other carries a tritium label) that become covalently connected during transpeptidation. Formation of this peptide bond
then allows capture and direct quantification of the radiolabled product, now joined to the biotin group, using the scintillation
proximity assay technology. Binding of the tritiated radioligand to streptavidin-coated beads causes the excitation of the
bead-embedded scintillant, thus resulting in the detection of radioactivity. Since no product purification step is required,
SPARK is amenable to simple automation, which makes it useful in high-throughput screens of natural or synthetic compound
libraries in the search for novel antibiotics.
Affiliation(s): (2) Center for Pharmaceutical Biotechnology, University of Illinois, Chicago, IL
(3) Innsbruck Biocenter, Division of Genomics and RNomics, Innsbruck Medical University, Innsbruck, Austria
(3) Innsbruck Biocenter, Division of Genomics and RNomics, Innsbruck Medical University, Innsbruck, Austria
Book Title: New Antibiotic Targets
Series: Methods in Molecular Medicine | Volume: 142 | Pub. Date: Dec-01-2007 | Page Range: 107-116 | DOI: 10.1007/978-1-59745-246-5_9
Subject: Immunology
Comments (Loading...) |
||
Loading... |





















